ISH Data Reference Atlas AGEA Brain Explorer Supplementary Data Documentation Help
Gene Search
Annotation Search
Anatomic Search
Temporal Search
Extended Studies
Enter Gene Name, Gene Symbol or Entrez Gene ID
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Browse by Gene Classification
Alzheimer disease amyloid secretase pathway
Alzheimer disease presenilin pathway
Anion channel
Cadherin signaling pathway
Calcium channel
Calcium-mediated signaling
Cyclic nucleotide-gated ion channel
EGF receptor signaling pathway
FGF signaling pathway
GABA receptor
G-protein coupled receptor
Hedgehog signaling pathway
Huntington disease
Hypoxia response via HIF activation
Inflammation mediated by chemokine and cytokine signaling pathway
Ion channel activity
Ligand-gated ion channel activity
MAPKKK cascade
Nervous system development
Neurological system process
Neurotransmitter secretion
NF-kappaB Cascade
Notch signaling pathway
Oxidative stress response
Parkinson disease
PDGF signaling pathway
Potassium channel
Sodium channel
Stress response
TGF-beta signaling pathway
Transcription factor
Wnt signaling pathway
Allen Developing Mouse Brain Atlas
Search the data

Use Gene Search to find ISH data for a specific gene of interest [more]

Use Correlation search to find genes with similar spatial expression profiles to a gene selected from Gene Search returns [more]

Log(expression) color key:
-1.53.5

About the Allen Developing Mouse Brain Atlas

A detailed atlas of gene expression across mouse brain development

Key features:

  • ~2000 genes functionally relevant to brain development or disorders of the brain
  • High resolution in situ hybridization image data across four prenatal and three early postnatal timepoints
  • Age-matched anatomic reference atlases
  • Advanced search and visualization tools
  • Brain Explorer® 3-D viewer
[more]

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